Class PairwiseGenomeComparator


  • public class PairwiseGenomeComparator
    extends java.lang.Object
    • Constructor Detail

      • PairwiseGenomeComparator

        public PairwiseGenomeComparator()
    • Method Detail

      • getDomainDistanceScoresMeans

        public java.util.List<DistanceMatrix> getDomainDistanceScoresMeans()
      • getSharedBinaryCombinationsBasedDistances

        public java.util.List<DistanceMatrix> getSharedBinaryCombinationsBasedDistances()
      • getSharedDomainsBasedDistances

        public java.util.List<DistanceMatrix> getSharedDomainsBasedDistances()
      • performPairwiseComparisonsJacknifed

        public void performPairwiseComparisonsJacknifed​(Species[] species,
                                                        int number_of_genomes,
                                                        java.util.List<GenomeWideCombinableDomains> list_of_genome_wide_combinable_domains,
                                                        boolean verbose,
                                                        int number_of_resamplings,
                                                        double jacknife_ratio,
                                                        long random_seed)